bamtools (2.5.3+dfsg-1) unstable; urgency=medium

  * Team upload
  * New upstream version
  * Fix FTBFS with CMake 4 (Closes: #1112718)
  * Standards-Version: 4.7.2 (routine-update)
  * Drop outdated patches
  * Add Doxyfile version patch

 -- Dominique Belhachemi <domibel@debian.org>  Fri, 26 Sep 2025 21:59:11 -0400

bamtools (2.5.2+dfsg-6) unstable; urgency=medium

  * Fix output data on bigendian architectures (Thanks a lot for the
    patch from Vladimir Petko <vladimir.petko@canonical.com>!)
    Closes: #1075990
  * Standards-Version: 4.7.0 (routine-update)
  * Build-Depends: s/pkg-config/pkgconf/

 -- Andreas Tille <tille@debian.org>  Fri, 12 Jul 2024 13:46:23 +0200

bamtools (2.5.2+dfsg-5) unstable; urgency=medium

  * d/control: add myself to uploaders.
  * d/rules: preserve pristine Doxyfile. (Closes: #1043881)
  * typo.patch: new: fix typo caught by lintian.

 -- Étienne Mollier <emollier@debian.org>  Fri, 15 Dec 2023 19:09:45 +0100

bamtools (2.5.2+dfsg-4) unstable; urgency=medium

  * Team upload.
  * d/control: libbamtools-doc depends on libjs-jquery.
    Thanks to Andreas Beckmann (Closes: #988848)
  * Standards-Version: 4.6.2 (routine-update)

 -- Étienne Mollier <emollier@debian.org>  Mon, 19 Dec 2022 22:45:16 +0100

bamtools (2.5.2+dfsg-3) unstable; urgency=medium

  * Reduce number of tests also for armel
    Closes: #992143

 -- Andreas Tille <tille@debian.org>  Fri, 02 Dec 2022 13:52:00 +0100

bamtools (2.5.2+dfsg-2) unstable; urgency=medium

  * Do not try to move Doxyfile.bak which does not exist any more in doxygen
    1.9.4
    Closes: #1015861
  * Build-Depends: pkg-config (since cmake is asking for it)
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Fri, 02 Sep 2022 19:53:29 +0200

bamtools (2.5.2+dfsg-1) experimental; urgency=medium

  [ Michael R. Crusoe ]
  * Standards-Version: 4.6.0 (routine-update)
  * refresh patches including reworking the shared & static library patch

  [ Andreas Tille ]
  * Remove Dominique Belhachemi from Uploaders (Thanks Dominique for all
    your work)
  * Remove unneeded lintian override

  [ Étienne Mollier ]
  * Remove gcc11.patch

 -- Andreas Tille <tille@debian.org>  Fri, 18 Mar 2022 13:25:54 +0100

bamtools (2.5.1+dfsg-10) unstable; urgency=medium

  * Team upload.
  * Add gcc11.patch (Closes: 983981)
  * Remove bamtools.lintian-overrides

 -- Étienne Mollier <emollier@debian.org>  Sat, 06 Nov 2021 19:31:45 +0100

bamtools (2.5.1+dfsg-9) unstable; urgency=medium

  [ Steffen Möller ]
  * Update metadata - indent and ref to guix

  [ Andreas Tille ]
  * Extend means to prevent timeouts from amd64 also to armhf and s390x
    Closes: #987023

 -- Andreas Tille <tille@debian.org>  Thu, 15 Apr 2021 21:28:36 +0200

bamtools (2.5.1+dfsg-8) unstable; urgency=medium

  * Exclude test that times out on arm64
    Closes: #953939
  * Standards-Version: 4.5.1 (routine-update)

 -- Andreas Tille <tille@debian.org>  Wed, 27 Jan 2021 08:26:37 +0100

bamtools (2.5.1+dfsg-7) unstable; urgency=medium

  * Override dh_auto_install-indep
    Closes: #961777

 -- Andreas Tille <tille@debian.org>  Fri, 29 May 2020 13:00:25 +0200

bamtools (2.5.1+dfsg-6) unstable; urgency=medium

  * Add IsSupplementaryAlignment() patch from bamtools code copy shipped
    with tiddit
  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Submit.
  * Use d-shlibs
  * Build additional static lib

 -- Andreas Tille <tille@debian.org>  Wed, 27 May 2020 12:14:50 +0200

bamtools (2.5.1+dfsg-5) unstable; urgency=medium

  * Ignore one test that is known to fail on ppc64el architecture
    Closes: #933505
  * Set upstream metadata fields: Bug-Database, Repository, Repository-
    Browse.

 -- Andreas Tille <tille@debian.org>  Tue, 10 Dec 2019 12:00:36 +0100

bamtools (2.5.1+dfsg-4) unstable; urgency=medium

  [ Jelmer Vernooĳ ]
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * debhelper-compat 12
  * Standards-Version: 4.4.1
  * Drop useless get-orig-source target
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Trim trailing whitespace.
  * Set upstream metadata fields: Repository.
  * Remove obsolete fields Name from debian/upstream/metadata.

 -- Andreas Tille <tille@debian.org>  Thu, 10 Oct 2019 12:59:38 +0200

bamtools (2.5.1+dfsg-3) unstable; urgency=medium

  * Point Vcs fields to salsa.debian.org
  * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the
    includes were formerly in lib package
    Closes: #894886

 -- Andreas Tille <tille@debian.org>  Thu, 05 Apr 2018 11:54:57 +0200

bamtools (2.5.1+dfsg-2) unstable; urgency=medium

  * Move /usr/includes to -dev from libbamtools2.4.0
  * debian/control: add Multi-Arch hints and remove unneeded ${devlibs:Depends}
  * Build the shared library.
  * drop 0002-support-out-of-source-build patch, as this was fixed differently
    upstream
  * Match upstream's soname change

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 03 Apr 2018 04:18:02 -0700

bamtools (2.5.1+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * cme fix dpkg-control
  * debhelper 11

  [ Michael R. Crusoe ]
  * Make release ready with cme fix dpkg
  * fix built in tests
  * debian/rules: remove unused variables; drop custom library install; add
    hardening

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 02 Apr 2018 09:47:32 -0700

bamtools (2.4.1+dfsg-2) unstable; urgency=medium

  * Team upload.

  [ Nadiya Sitdykova ]
  * add autopkgtest test-suite

  [ Afif Elghraoui ]
  * remove unused lintian overrides

  [ Steffen Moeller ]
  * debian/upstream/metadata: Added refs to bio.tools and OMICtools
  * debian/copyright: Corrected case of upstream name
  * debian/control: Updated policy compliance to 4.0.1

 -- Nadiya Sitdykova <rovenskasa@gmail.com>  Mon, 07 Aug 2017 17:01:19 -0400

bamtools (2.4.1+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 10
  * cme fix dpkg-control
  * d/watch: version=4
  * Priority: optional
  * soversion stays at 2.4.0 (FIXME: in future versions this should
    be rather 2.5 without micro number)

 -- Andreas Tille <tille@debian.org>  Fri, 13 Jan 2017 10:47:00 +0100

bamtools (2.4.0+dfsg-6) unstable; urgency=medium

  * Whoops, forgot the '+dfsg' in my fix for the movement of the development
    docs into their own -doc package. Thanks go to Andreas Beckmann
    <anbe@debian.org> for his patience and help. (Closes: 817188)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Thu, 10 Mar 2016 01:38:21 -0800

bamtools (2.4.0+dfsg-5) unstable; urgency=medium

  * Fix the movement of the development docs into their own -doc package
    (Closes: 817188)
  * Fix another typo in upstream

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Wed, 09 Mar 2016 00:58:33 -0800

bamtools (2.4.0+dfsg-4) unstable; urgency=medium

  * Lower priority to 'extra' due to dependency on libjsoncpp1
  * Split out -doc package for library documentation & enable standalone -arch
    and -indep building
  * Fix spelling error from upstream
  * Update Standards-Version
  * Update my email address
  * Fix Vcs-Git URL
  * Quiet some Doxygen warnings
  * Add gcc-6 compat
  * Include ${devlibs} for -dev package
  * Forwarded many patches upstream
  * Remove the html docs directory during d/rules clean

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sat, 05 Mar 2016 09:07:48 -0800

bamtools (2.4.0+dfsg-3) unstable; urgency=medium

  * allows one to read bam files on big endian systems (Closes: #807979)
  * added sam_spec_example.sam and sam_spec_example.bam files
  * activated cmake testing framework abd added simple tests

 -- Dominique Belhachemi <domibel@debian.org>  Sun, 20 Dec 2015 15:41:42 -0500

bamtools (2.4.0+dfsg-2) unstable; urgency=medium

  [ Kevin Murray ]
  * Fix re-upload confusion
  * Fix build of doxygen docs, add docs-base
  * Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz
  * Refresh patch queue

  [ Andreas Tille]
  * Fix linitan overides for bamtools

 -- Kevin Murray <spam@kdmurray.id.au>  Thu, 24 Sep 2015 17:27:16 +1000

bamtools (2.4.0+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Fix d/watch + get-orig-source target
  * Adapt library package name to version number

 -- Andreas Tille <tille@debian.org>  Sun, 05 Jul 2015 15:41:35 +0200

bamtools (2.3.0+dfsg-3) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Make Doxygen documentation generation reproducible by eliminating
    timestamps.

  [ Andreas Tille ]
  * Install cmake file
  * Fix some issues in formatting of long descriptions (thanks for the patch
    to Daniele Forsi <dforsi@gmail.com>)
    Closes: #780437
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Mon, 18 May 2015 11:53:14 +0200

bamtools (2.3.0+dfsg-2) unstable; urgency=medium

  * Drop d-shlibs patch and add versioned Build-Depends for d-shlibs
    Closes: #753210

 -- Andreas Tille <tille@debian.org>  Mon, 30 Jun 2014 09:50:50 +0200

bamtools (2.3.0+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #692498)

 -- Andreas Tille <tille@debian.org>  Wed, 02 Apr 2014 13:11:47 +0200
