nQuack 1.0.5

• Expected-maximization code updates to export the probability of loci belonging to each mixture, denoted pir.
  • When, glreturn = TRUE each emstep function will now return a matrix where each row is a locus and each column is a mixture. The observations represent the probability that the locus observed belongs to each mixture. In the supplement for our publication, this is the Zi value in the E step.
• Link to CRAN updated.

nQuack 1.0.4

• Documentation updates including:
  • Updated README.md with new features and usage instructions.
  • Improved examples and tutorials to help users use nQuack correctly!
  • Input data expanded to include VCFs and output from Qploidy2.
  • Updated formatting on function documentation.
• Preparing package for CRAN:
  • Adding checks for dependencies to ensure smooth installation and usage.
  • Moved full example data to Zenodo to decrease file size of the package and improve installation speed.