CRAN Package Check Results for Package RMark

Last updated on 2026-08-02 12:52:14 CEST.

Flavor	Version	T_install	T_check	T_total	Status	Flags
r-devel-linux-x86_64-debian-clang	3.1.0	19.28	145.19	164.47	OK	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-debian-gcc	3.1.0	13.84	102.21	116.05	NOTE	--install=fake --no-examples --no-tests --no-vignettes
r-devel-linux-x86_64-fedora-clang	3.1.0	33.00	220.67	253.67	NOTE
r-devel-linux-x86_64-fedora-gcc	3.1.0	13.00	95.13	108.13	NOTE
r-devel-windows-x86_64	3.1.0	30.00	177.00	207.00	OK
r-patched-linux-x86_64	3.1.0	20.75	132.55	153.30	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-linux-x86_64	3.1.0	16.48	134.31	150.79	OK	--install=fake --no-examples --no-tests --no-vignettes
r-release-macos-arm64	3.1.0	5.00	34.00	39.00	ERROR
r-release-macos-x86_64	3.1.0	14.00	125.00	139.00	ERROR
r-release-windows-x86_64	3.1.0	23.00	180.00	203.00	OK
r-oldrel-macos-arm64	3.1.0	5.00	35.00	40.00	ERROR
r-oldrel-macos-x86_64	3.1.0	14.00	138.00	152.00	ERROR
r-oldrel-windows-x86_64	3.1.0	32.00	220.00	252.00	OK

Check Details

Version: 3.1.0
Flags: --install=fake --no-examples --no-tests --no-vignettes
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0QNcVB’ ‘~/tmp/scratch/Rtmp1xL728’ ‘~/tmp/scratch/Rtmp26SydC’ ‘~/tmp/scratch/Rtmp2OMXLG’ ‘~/tmp/scratch/Rtmp2Ra1yk’ ‘~/tmp/scratch/Rtmp3EHUA2’ ‘~/tmp/scratch/Rtmp3SDPG3’ ‘~/tmp/scratch/Rtmp4H6AZs’ ‘~/tmp/scratch/Rtmp5CTzNv’ ‘~/tmp/scratch/Rtmp5OaQT9’ ‘~/tmp/scratch/Rtmp5Qa9v6’ ‘~/tmp/scratch/Rtmp5cyc3c’ ‘~/tmp/scratch/Rtmp6dq7lG’ ‘~/tmp/scratch/Rtmp6jIZX3’ ‘~/tmp/scratch/Rtmp6mPZT2’ ‘~/tmp/scratch/Rtmp6zSozq’ ‘~/tmp/scratch/Rtmp7GAXov’ ‘~/tmp/scratch/Rtmp7SCl2c’ ‘~/tmp/scratch/Rtmp7ruwaS’ ‘~/tmp/scratch/Rtmp7yrns5’ ‘~/tmp/scratch/Rtmp8OUiVk’ ‘~/tmp/scratch/Rtmp8lDxOJ’ ‘~/tmp/scratch/Rtmp9L08Xh’ ‘~/tmp/scratch/Rtmp9hMTy5’ ‘~/tmp/scratch/RtmpA0pkBZ’ ‘~/tmp/scratch/RtmpAPD1uM’ ‘~/tmp/scratch/RtmpAaMDom’ ‘~/tmp/scratch/RtmpB5URuv’ ‘~/tmp/scratch/RtmpBnZjen’ ‘~/tmp/scratch/RtmpCyStlh’ ‘~/tmp/scratch/RtmpDJXM9X’ ‘~/tmp/scratch/RtmpEZe82T’ ‘~/tmp/scratch/RtmpEetfs5’ ‘~/tmp/scratch/RtmpEywARU’ ‘~/tmp/scratch/RtmpHRwk3G’ ‘~/tmp/scratch/RtmpHtIOVa’ ‘~/tmp/scratch/RtmpI49pFf’ ‘~/tmp/scratch/RtmpILWJjD’ ‘~/tmp/scratch/RtmpIvY5m5’ ‘~/tmp/scratch/RtmpJ4bgSO’ ‘~/tmp/scratch/RtmpJT4UED’ ‘~/tmp/scratch/RtmpJvRmih’ ‘~/tmp/scratch/RtmpKclgmE’ ‘~/tmp/scratch/RtmpKlIjcB’ ‘~/tmp/scratch/RtmpKqvkO9’ ‘~/tmp/scratch/RtmpLGaugb’ ‘~/tmp/scratch/RtmpLGbV1Y’ ‘~/tmp/scratch/RtmpM4tNjC’ ‘~/tmp/scratch/RtmpMNFEYc’ ‘~/tmp/scratch/RtmpN8Wkx6’ ‘~/tmp/scratch/RtmpNQmEG0’ ‘~/tmp/scratch/RtmpNjnq5v’ ‘~/tmp/scratch/RtmpO3MRst’ ‘~/tmp/scratch/RtmpOceRAX’ ‘~/tmp/scratch/RtmpPc5J5t’ ‘~/tmp/scratch/RtmpPjxTeZ’ ‘~/tmp/scratch/RtmpPx16uA’ ‘~/tmp/scratch/RtmpQ90dQ0’ ‘~/tmp/scratch/RtmpQUQtcx’ ‘~/tmp/scratch/RtmpQbG9ZA’ ‘~/tmp/scratch/RtmpT6WF1O’ ‘~/tmp/scratch/RtmpUFM4Ax’ ‘~/tmp/scratch/RtmpUmXcqC’ ‘~/tmp/scratch/RtmpUy3Ooq’ ‘~/tmp/scratch/RtmpV09nhk’ ‘~/tmp/scratch/RtmpV2garj’ ‘~/tmp/scratch/RtmpV7EEOO’ ‘~/tmp/scratch/RtmpVpv23p’ ‘~/tmp/scratch/RtmpVzs9du’ ‘~/tmp/scratch/RtmpWcu5yb’ ‘~/tmp/scratch/RtmpWrV7kU’ ‘~/tmp/scratch/RtmpXbu61Y’ ‘~/tmp/scratch/RtmpXsSoFN’ ‘~/tmp/scratch/RtmpY1kz4a’ ‘~/tmp/scratch/RtmpYA3u3L’ ‘~/tmp/scratch/RtmpYQQAuB’ ‘~/tmp/scratch/RtmpYeQZ9o’ ‘~/tmp/scratch/RtmpYuJGNn’ ‘~/tmp/scratch/RtmpZqcnnd’ ‘~/tmp/scratch/RtmpZsN0Dr’ ‘~/tmp/scratch/Rtmpa4scAC’ ‘~/tmp/scratch/Rtmpa8A2om’ ‘~/tmp/scratch/RtmpaBEUWq’ ‘~/tmp/scratch/RtmpaKi41e’ ‘~/tmp/scratch/RtmpaYvcHS’ ‘~/tmp/scratch/RtmpbY04Sg’ ‘~/tmp/scratch/Rtmpchy9cU’ ‘~/tmp/scratch/Rtmpd3YoMZ’ ‘~/tmp/scratch/RtmpdCmbHn’ ‘~/tmp/scratch/Rtmpdcinri’ ‘~/tmp/scratch/Rtmpdsv5j1’ ‘~/tmp/scratch/RtmpdvuSJX’ ‘~/tmp/scratch/Rtmpe44r1T’ ‘~/tmp/scratch/RtmpeQO50M’ ‘~/tmp/scratch/Rtmpea35VB’ ‘~/tmp/scratch/Rtmpequ8w4’ ‘~/tmp/scratch/RtmpfnWsIV’ ‘~/tmp/scratch/Rtmpga6zZu’ ‘~/tmp/scratch/Rtmpgd7soJ’ ‘~/tmp/scratch/RtmphvB5Cd’ ‘~/tmp/scratch/RtmpiJg3ia’ ‘~/tmp/scratch/RtmpiS1Fx4’ ‘~/tmp/scratch/RtmpiVfLeT’ ‘~/tmp/scratch/Rtmpk3rx8P’ ‘~/tmp/scratch/Rtmpk70nQM’ ‘~/tmp/scratch/RtmpkSgzSX’ ‘~/tmp/scratch/RtmpkdQSDF’ ‘~/tmp/scratch/RtmplaX6Ms’ ‘~/tmp/scratch/RtmplkKvUH’ ‘~/tmp/scratch/RtmplmsNB3’ ‘~/tmp/scratch/Rtmpm03nzW’ ‘~/tmp/scratch/Rtmpm5V0Bo’ ‘~/tmp/scratch/RtmpmEkfKD’ ‘~/tmp/scratch/RtmpnIjYTq’ ‘~/tmp/scratch/Rtmpobck9o’ ‘~/tmp/scratch/RtmppCJIRI’ ‘~/tmp/scratch/RtmpqiblKs’ ‘~/tmp/scratch/RtmprS229y’ ‘~/tmp/scratch/Rtmprb4IAJ’ ‘~/tmp/scratch/RtmpsQGDwg’ ‘~/tmp/scratch/RtmpscAzJi’ ‘~/tmp/scratch/Rtmpsnh971’ ‘~/tmp/scratch/Rtmpt3ggdI’ ‘~/tmp/scratch/RtmpuGFJ23’ ‘~/tmp/scratch/Rtmpuv5CCs’ ‘~/tmp/scratch/Rtmpv235sH’ ‘~/tmp/scratch/RtmpvMw1Pf’ ‘~/tmp/scratch/Rtmpw0Twif’ ‘~/tmp/scratch/Rtmpw8yilH’ ‘~/tmp/scratch/RtmpwX8CzG’ ‘~/tmp/scratch/Rtmpx90MY8’ ‘~/tmp/scratch/RtmpxMEnyB’ ‘~/tmp/scratch/RtmpxaDLPg’ ‘~/tmp/scratch/RtmpyH22Fh’ ‘~/tmp/scratch/RtmpyvQb88’ ‘~/tmp/scratch/RtmpyyC0Du’ ‘~/tmp/scratch/RtmpzWT1Qk’ ‘~/tmp/scratch/RtmpzYLVC0’ ‘~/tmp/scratch/RtmpzinKxg’ ‘~/tmp/scratch/Rtmpzptfvm’ ‘~/tmp/scratch/xvfb-run.0tw5V9’ ‘~/tmp/scratch/xvfb-run.1EsmnJ’ ‘~/tmp/scratch/xvfb-run.227CVR’ ‘~/tmp/scratch/xvfb-run.46T6wT’ ‘~/tmp/scratch/xvfb-run.4qmzuS’ ‘~/tmp/scratch/xvfb-run.5yItDj’ ‘~/tmp/scratch/xvfb-run.6f4MOj’ ‘~/tmp/scratch/xvfb-run.71s3q2’ ‘~/tmp/scratch/xvfb-run.8qeENL’ ‘~/tmp/scratch/xvfb-run.94gsLK’ ‘~/tmp/scratch/xvfb-run.9C93gY’ ‘~/tmp/scratch/xvfb-run.AmQPqk’ ‘~/tmp/scratch/xvfb-run.COpX2N’ ‘~/tmp/scratch/xvfb-run.DdHXAm’ ‘~/tmp/scratch/xvfb-run.FFeghy’ ‘~/tmp/scratch/xvfb-run.FgN36s’ ‘~/tmp/scratch/xvfb-run.FsNaCf’ ‘~/tmp/scratch/xvfb-run.HJBmgX’ ‘~/tmp/scratch/xvfb-run.Im2YGL’ ‘~/tmp/scratch/xvfb-run.J0d3sy’ ‘~/tmp/scratch/xvfb-run.JezC0C’ ‘~/tmp/scratch/xvfb-run.JihKge’ ‘~/tmp/scratch/xvfb-run.KLIgqS’ ‘~/tmp/scratch/xvfb-run.Lxisns’ ‘~/tmp/scratch/xvfb-run.NFsQEw’ ‘~/tmp/scratch/xvfb-run.NxK6bV’ ‘~/tmp/scratch/xvfb-run.P53qie’ ‘~/tmp/scratch/xvfb-run.PbJwSG’ ‘~/tmp/scratch/xvfb-run.QKqKnx’ ‘~/tmp/scratch/xvfb-run.RZCbIM’ ‘~/tmp/scratch/xvfb-run.Resi0p’ ‘~/tmp/scratch/xvfb-run.RgEqCF’ ‘~/tmp/scratch/xvfb-run.RkyKKx’ ‘~/tmp/scratch/xvfb-run.V7NwCo’ ‘~/tmp/scratch/xvfb-run.WFNteD’ ‘~/tmp/scratch/xvfb-run.WuJEiY’ ‘~/tmp/scratch/xvfb-run.WvQRd8’ ‘~/tmp/scratch/xvfb-run.YPdMI3’ ‘~/tmp/scratch/xvfb-run.ZIlH4z’ ‘~/tmp/scratch/xvfb-run.atLA04’ ‘~/tmp/scratch/xvfb-run.bRQfNc’ ‘~/tmp/scratch/xvfb-run.bTkFCq’ ‘~/tmp/scratch/xvfb-run.fB5nbO’ ‘~/tmp/scratch/xvfb-run.fnVY0u’ ‘~/tmp/scratch/xvfb-run.h4YAul’ ‘~/tmp/scratch/xvfb-run.iNh3lA’ ‘~/tmp/scratch/xvfb-run.jmEtxa’ ‘~/tmp/scratch/xvfb-run.jp3FpG’ ‘~/tmp/scratch/xvfb-run.jvLa74’ ‘~/tmp/scratch/xvfb-run.kKsNoA’ ‘~/tmp/scratch/xvfb-run.kvVDoz’ ‘~/tmp/scratch/xvfb-run.mLZ3Ze’ ‘~/tmp/scratch/xvfb-run.rUlZ6u’ ‘~/tmp/scratch/xvfb-run.rp0vAD’ ‘~/tmp/scratch/xvfb-run.u9k8CK’ ‘~/tmp/scratch/xvfb-run.uYot8K’ ‘~/tmp/scratch/xvfb-run.vD0srB’ ‘~/tmp/scratch/xvfb-run.vdq2jF’ ‘~/tmp/scratch/xvfb-run.wvKjBR’ ‘~/tmp/scratch/xvfb-run.x3a4sN’ ‘~/tmp/scratch/xvfb-run.ymdQoI’ ‘~/tmp/scratch/xvfb-run.ze7VAb’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘mark001.resbatch’ Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.1.0
Check: examples
Result: ERROR Running examples in ‘RMark-Ex.R’ failed The error most likely occurred in: > ### Name: Blackduck > ### Title: Black duck known fate data > ### Aliases: Blackduck > ### Keywords: datasets > > ### ** Examples > > > data(Blackduck) > # Change BirdAge to numeric; starting with version 1.6.3 factor variables are > # no longer allowed. They can work as in this example but they can be misleading > # and fail if the levels are non-numeric. The real parameters will remain > # unchanged but the betas will be different. > Blackduck$BirdAge=as.numeric(Blackduck$BirdAge)-1 > run.Blackduck=function() + { + # + # Process data + # + bduck.processed=process.data(Blackduck,model="Known") + # + # Create default design data + # + bduck.ddl=make.design.data(bduck.processed) + # + # Add occasion specific data min < 0; I have no idea what it is + # + bduck.ddl$S$min=c(4,6,7,7,7,6,5,5) + # + # Define range of models for S + # + S.dot=list(formula=~1) + S.time=list(formula=~time) + S.min=list(formula=~min) + S.BirdAge=list(formula=~BirdAge) + # + # Note that in the following model in the MARK example, the covariates + # have been standardized. That means that the beta parameters will be different + # for BirdAge, Weight and their interaction but the likelihood and real parameter + # estimates are the same. + # + S.BirdAgexWeight.min=list(formula=~min+BirdAge*Weight) + S.BirdAge.Weight=list(formula=~BirdAge+Weight) + # + # Create model list and run assortment of models + # + model.list=create.model.list("Known") + bduck.results=mark.wrapper(model.list,data=bduck.processed,ddl=bduck.ddl, + invisible=FALSE,threads=1,delete=TRUE) + + # + # Return model table and list of models + # + return(bduck.results) + } > bduck.results=run.Blackduck() S.BirdAge sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAge.Weight sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.BirdAgexWeight.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.dot sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.min sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe S.time sh: mark: command not found Warning in system(paste("mark i=", inputfile, " o=", outfile, " v=", vcvfile, : error in running command Error in run.mark.model(model, invisible = invisible, adjust = adjust, : Output file does not exist. Unable to find or run mark.exe No mark models found Error in collect.models() : Calls: run.Blackduck -> mark.wrapper -> collect.models Execution halted Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64