Last updated on 2026-08-02 12:51:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 44.61 | 400.17 | 444.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 30.12 | 281.39 | 311.51 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 76.00 | 627.08 | 703.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 46.00 | 335.00 | 381.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 41.42 | 385.95 | 427.37 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 41.24 | 391.30 | 432.54 | OK | |
| r-release-macos-arm64 | 1.0.1 | 9.00 | 84.00 | 93.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 28.00 | 211.00 | 239.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 47.00 | 336.00 | 383.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 9.00 | 76.00 | 85.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 28.00 | 247.00 | 275.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 72.00 | 457.00 | 529.00 | OK |
Version: 1.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0G4zWU’ ‘~/tmp/scratch/Rtmp0dRNc0’
‘~/tmp/scratch/Rtmp0s1WcO’ ‘~/tmp/scratch/Rtmp0zCd1K’
‘~/tmp/scratch/Rtmp1vMlGe’ ‘~/tmp/scratch/Rtmp20WH3g’
‘~/tmp/scratch/Rtmp22Cw4h’ ‘~/tmp/scratch/Rtmp26Fk1v’
‘~/tmp/scratch/Rtmp30JfXu’ ‘~/tmp/scratch/Rtmp31V387’
‘~/tmp/scratch/Rtmp335AI4’ ‘~/tmp/scratch/Rtmp3XyUx0’
‘~/tmp/scratch/Rtmp3afwdP’ ‘~/tmp/scratch/Rtmp3ePjuf’
‘~/tmp/scratch/Rtmp47GSz0’ ‘~/tmp/scratch/Rtmp5DblWf’
‘~/tmp/scratch/Rtmp5Dtpjz’ ‘~/tmp/scratch/Rtmp6B6RhQ’
‘~/tmp/scratch/Rtmp6KVUM7’ ‘~/tmp/scratch/Rtmp6UGRo8’
‘~/tmp/scratch/Rtmp6bwq55’ ‘~/tmp/scratch/Rtmp6mBTfP’
‘~/tmp/scratch/Rtmp6uqej6’ ‘~/tmp/scratch/Rtmp7pU2GO’
‘~/tmp/scratch/Rtmp7xmuCO’ ‘~/tmp/scratch/Rtmp85Yztv’
‘~/tmp/scratch/Rtmp8AINT4’ ‘~/tmp/scratch/Rtmp92tbl6’
‘~/tmp/scratch/Rtmp930hgc’ ‘~/tmp/scratch/Rtmp9AtPZw’
‘~/tmp/scratch/Rtmp9IhvKh’ ‘~/tmp/scratch/RtmpA8usvY’
‘~/tmp/scratch/RtmpAFbT1R’ ‘~/tmp/scratch/RtmpAP3Vd7’
‘~/tmp/scratch/RtmpB6j3ro’ ‘~/tmp/scratch/RtmpBKgwl5’
‘~/tmp/scratch/RtmpBYxEvj’ ‘~/tmp/scratch/RtmpBa0u2H’
‘~/tmp/scratch/RtmpC6nbsz’ ‘~/tmp/scratch/RtmpCHIaSk’
‘~/tmp/scratch/RtmpCHigkE’ ‘~/tmp/scratch/RtmpCz47pB’
‘~/tmp/scratch/RtmpDXRqCw’ ‘~/tmp/scratch/RtmpDbeLmr’
‘~/tmp/scratch/RtmpDieLP8’ ‘~/tmp/scratch/RtmpEURT9r’
‘~/tmp/scratch/RtmpEUSHRW’ ‘~/tmp/scratch/RtmpEUkxfG’
‘~/tmp/scratch/RtmpEdVdvh’ ‘~/tmp/scratch/RtmpEggTlU’
‘~/tmp/scratch/RtmpF2MOIs’ ‘~/tmp/scratch/RtmpFcBNSp’
‘~/tmp/scratch/RtmpG6UyYc’ ‘~/tmp/scratch/RtmpGa9DGR’
‘~/tmp/scratch/RtmpGow7kZ’ ‘~/tmp/scratch/RtmpHJxakK’
‘~/tmp/scratch/RtmpHYwnob’ ‘~/tmp/scratch/RtmpHquEsr’
‘~/tmp/scratch/RtmpJRzWye’ ‘~/tmp/scratch/RtmpJV4mzE’
‘~/tmp/scratch/RtmpKgrL9Q’ ‘~/tmp/scratch/RtmpKjZpIs’
‘~/tmp/scratch/RtmpLPxZGk’ ‘~/tmp/scratch/RtmpLt6swQ’
‘~/tmp/scratch/RtmpM5Oper’ ‘~/tmp/scratch/RtmpMu6wrK’
‘~/tmp/scratch/RtmpNGVr4g’ ‘~/tmp/scratch/RtmpNvhwxE’
‘~/tmp/scratch/RtmpOLkFO7’ ‘~/tmp/scratch/RtmpP0ZUsQ’
‘~/tmp/scratch/RtmpPJt6wt’ ‘~/tmp/scratch/RtmpPOfpX1’
‘~/tmp/scratch/RtmpPnRGPl’ ‘~/tmp/scratch/RtmpPt5WuT’
‘~/tmp/scratch/RtmpPvKQnd’ ‘~/tmp/scratch/RtmpPwWKZS’
‘~/tmp/scratch/RtmpQlHLkb’ ‘~/tmp/scratch/RtmpQoRlf6’
‘~/tmp/scratch/RtmpRjh5n3’ ‘~/tmp/scratch/RtmpS5cFhA’
‘~/tmp/scratch/RtmpSO4mEG’ ‘~/tmp/scratch/RtmpSfTkPu’
‘~/tmp/scratch/RtmpTCVJwg’ ‘~/tmp/scratch/RtmpTvK6QP’
‘~/tmp/scratch/RtmpUwkUJR’ ‘~/tmp/scratch/RtmpV28S1h’
‘~/tmp/scratch/RtmpVoQ5Uq’ ‘~/tmp/scratch/RtmpW77LTM’
‘~/tmp/scratch/RtmpWCFA9B’ ‘~/tmp/scratch/RtmpWFLnBH’
‘~/tmp/scratch/RtmpWG00lZ’ ‘~/tmp/scratch/RtmpX0Bhe9’
‘~/tmp/scratch/RtmpYYLc1p’ ‘~/tmp/scratch/RtmpYZER7O’
‘~/tmp/scratch/RtmpYhmJBn’ ‘~/tmp/scratch/RtmpYlYeww’
‘~/tmp/scratch/RtmpZj5IG7’ ‘~/tmp/scratch/Rtmpa8iWfK’
‘~/tmp/scratch/RtmpaMG7zq’ ‘~/tmp/scratch/RtmpaOPWBK’
‘~/tmp/scratch/RtmpaxsDrF’ ‘~/tmp/scratch/RtmpbdPIZd’
‘~/tmp/scratch/RtmpbiOUhQ’ ‘~/tmp/scratch/RtmpbmAZ8E’
‘~/tmp/scratch/RtmpcAFl0k’ ‘~/tmp/scratch/RtmpcDbvZi’
‘~/tmp/scratch/RtmpdHAtSY’ ‘~/tmp/scratch/Rtmpdd241Y’
‘~/tmp/scratch/Rtmpe7okJB’ ‘~/tmp/scratch/Rtmpe7uduY’
‘~/tmp/scratch/RtmpeDm1v2’ ‘~/tmp/scratch/RtmpeNttaU’
‘~/tmp/scratch/Rtmpei1lzX’ ‘~/tmp/scratch/RtmpeoMBET’
‘~/tmp/scratch/Rtmpfm9e9O’ ‘~/tmp/scratch/Rtmpfuszg3’
‘~/tmp/scratch/Rtmpg6dvLZ’ ‘~/tmp/scratch/Rtmpg8ds5X’
‘~/tmp/scratch/RtmpgEyHVP’ ‘~/tmp/scratch/RtmpgJuwqx’
‘~/tmp/scratch/RtmpgKWFBM’ ‘~/tmp/scratch/RtmpgOwuqa’
‘~/tmp/scratch/RtmpgZbYtC’ ‘~/tmp/scratch/Rtmpgg0LrJ’
‘~/tmp/scratch/RtmphBEag7’ ‘~/tmp/scratch/RtmphEH4nA’
‘~/tmp/scratch/RtmpheF7DZ’ ‘~/tmp/scratch/Rtmphv9Mhj’
‘~/tmp/scratch/Rtmpi6CgN1’ ‘~/tmp/scratch/RtmpiEWsIb’
‘~/tmp/scratch/RtmpiZfVkI’ ‘~/tmp/scratch/RtmpjQe8hk’
‘~/tmp/scratch/RtmpjsrhZs’ ‘~/tmp/scratch/Rtmpk8QnBO’
‘~/tmp/scratch/RtmpkJ6lrx’ ‘~/tmp/scratch/RtmpkJWrY7’
‘~/tmp/scratch/RtmpkJbCJX’ ‘~/tmp/scratch/RtmplEpTzW’
‘~/tmp/scratch/RtmplOvhNd’ ‘~/tmp/scratch/RtmplUfC0H’
‘~/tmp/scratch/RtmplVcVLS’ ‘~/tmp/scratch/RtmpnJyzwI’
‘~/tmp/scratch/RtmpnM4qyo’ ‘~/tmp/scratch/RtmpolSVxl’
‘~/tmp/scratch/RtmppPNJlR’ ‘~/tmp/scratch/Rtmpq0P8z7’
‘~/tmp/scratch/RtmpqtFXgw’ ‘~/tmp/scratch/RtmprKfc0c’
‘~/tmp/scratch/RtmprUWL1g’ ‘~/tmp/scratch/RtmprhvDP2’
‘~/tmp/scratch/Rtmprzzb29’ ‘~/tmp/scratch/RtmpseR2yN’
‘~/tmp/scratch/Rtmpt0PeER’ ‘~/tmp/scratch/RtmptsA3ML’
‘~/tmp/scratch/Rtmpu2f0n5’ ‘~/tmp/scratch/RtmpudYBte’
‘~/tmp/scratch/RtmpumS7mL’ ‘~/tmp/scratch/RtmpvQi2Vp’
‘~/tmp/scratch/RtmpvYBkmR’ ‘~/tmp/scratch/Rtmpvn3ipQ’
‘~/tmp/scratch/RtmpvvR9dP’ ‘~/tmp/scratch/RtmpvvhRHq’
‘~/tmp/scratch/RtmpwKgBpC’ ‘~/tmp/scratch/RtmpwL76n2’
‘~/tmp/scratch/Rtmpx1kk5c’ ‘~/tmp/scratch/Rtmpx67cs1’
‘~/tmp/scratch/RtmpxLz1rC’ ‘~/tmp/scratch/RtmpxWpn9r’
‘~/tmp/scratch/Rtmpxmn9fu’ ‘~/tmp/scratch/Rtmpy92aME’
‘~/tmp/scratch/RtmpyCGSJZ’ ‘~/tmp/scratch/RtmpzZ36Ly’
‘~/tmp/scratch/RtmpzkKqEL’ ‘~/tmp/scratch/ccLHUPdN.s’
‘~/tmp/scratch/xvfb-run.0xV8Bx’ ‘~/tmp/scratch/xvfb-run.18SkLl’
‘~/tmp/scratch/xvfb-run.1l1KoW’ ‘~/tmp/scratch/xvfb-run.1lZVd9’
‘~/tmp/scratch/xvfb-run.3tYJzm’ ‘~/tmp/scratch/xvfb-run.41uLVL’
‘~/tmp/scratch/xvfb-run.4BHtGt’ ‘~/tmp/scratch/xvfb-run.4tgDdi’
‘~/tmp/scratch/xvfb-run.4ueAJn’ ‘~/tmp/scratch/xvfb-run.6MdAF3’
‘~/tmp/scratch/xvfb-run.6cbDsy’ ‘~/tmp/scratch/xvfb-run.6kvoof’
‘~/tmp/scratch/xvfb-run.6xD7A9’ ‘~/tmp/scratch/xvfb-run.8IycZ1’
‘~/tmp/scratch/xvfb-run.8iU8Oj’ ‘~/tmp/scratch/xvfb-run.9sZIeg’
‘~/tmp/scratch/xvfb-run.Av458c’ ‘~/tmp/scratch/xvfb-run.AzPuSI’
‘~/tmp/scratch/xvfb-run.C3sgXw’ ‘~/tmp/scratch/xvfb-run.CvinEO’
‘~/tmp/scratch/xvfb-run.Ej8RH3’ ‘~/tmp/scratch/xvfb-run.FIC62A’
‘~/tmp/scratch/xvfb-run.FNG1oN’ ‘~/tmp/scratch/xvfb-run.FrT6eT’
‘~/tmp/scratch/xvfb-run.GrU3Cx’ ‘~/tmp/scratch/xvfb-run.I0mRHu’
‘~/tmp/scratch/xvfb-run.IlbVxW’ ‘~/tmp/scratch/xvfb-run.KkrEhD’
‘~/tmp/scratch/xvfb-run.LehQsf’ ‘~/tmp/scratch/xvfb-run.LrRHfF’
‘~/tmp/scratch/xvfb-run.M6Tbdm’ ‘~/tmp/scratch/xvfb-run.MRm7aS’
‘~/tmp/scratch/xvfb-run.Mwc8Mi’ ‘~/tmp/scratch/xvfb-run.Mzaz2N’
‘~/tmp/scratch/xvfb-run.NDQtAz’ ‘~/tmp/scratch/xvfb-run.NlBscP’
‘~/tmp/scratch/xvfb-run.POjB7x’ ‘~/tmp/scratch/xvfb-run.QSt58L’
‘~/tmp/scratch/xvfb-run.T5zrsD’ ‘~/tmp/scratch/xvfb-run.Tq71RG’
‘~/tmp/scratch/xvfb-run.UW5kzM’ ‘~/tmp/scratch/xvfb-run.UaGyob’
‘~/tmp/scratch/xvfb-run.VNdWDc’ ‘~/tmp/scratch/xvfb-run.VmLndr’
‘~/tmp/scratch/xvfb-run.WCPBqk’ ‘~/tmp/scratch/xvfb-run.XY33TH’
‘~/tmp/scratch/xvfb-run.ZCnWvG’ ‘~/tmp/scratch/xvfb-run.Zrk9ML’
‘~/tmp/scratch/xvfb-run.aPCEsv’ ‘~/tmp/scratch/xvfb-run.bwxyRI’
‘~/tmp/scratch/xvfb-run.dzOCYY’ ‘~/tmp/scratch/xvfb-run.eDFd1K’
‘~/tmp/scratch/xvfb-run.eF6dux’ ‘~/tmp/scratch/xvfb-run.esBmB0’
‘~/tmp/scratch/xvfb-run.foA9dC’ ‘~/tmp/scratch/xvfb-run.gD9v5O’
‘~/tmp/scratch/xvfb-run.gStfQP’ ‘~/tmp/scratch/xvfb-run.hdplKh’
‘~/tmp/scratch/xvfb-run.hoYZjG’ ‘~/tmp/scratch/xvfb-run.huvPao’
‘~/tmp/scratch/xvfb-run.iaohJ1’ ‘~/tmp/scratch/xvfb-run.jlI877’
‘~/tmp/scratch/xvfb-run.l2H3UE’ ‘~/tmp/scratch/xvfb-run.lhRXcl’
‘~/tmp/scratch/xvfb-run.lvr6FW’ ‘~/tmp/scratch/xvfb-run.mhwrBp’
‘~/tmp/scratch/xvfb-run.mk1vNz’ ‘~/tmp/scratch/xvfb-run.nLEsN2’
‘~/tmp/scratch/xvfb-run.oI3q2E’ ‘~/tmp/scratch/xvfb-run.oY2DdD’
‘~/tmp/scratch/xvfb-run.ois016’ ‘~/tmp/scratch/xvfb-run.qMSIwI’
‘~/tmp/scratch/xvfb-run.r5HCDA’ ‘~/tmp/scratch/xvfb-run.tikteT’
‘~/tmp/scratch/xvfb-run.tpljvL’ ‘~/tmp/scratch/xvfb-run.vZWwn6’
‘~/tmp/scratch/xvfb-run.wTNUpq’ ‘~/tmp/scratch/xvfb-run.wjs8ji’
‘~/tmp/scratch/xvfb-run.wwnTEq’ ‘~/tmp/scratch/xvfb-run.xBU4Uo’
‘~/tmp/scratch/xvfb-run.ykz6WF’ ‘~/tmp/scratch/xvfb-run.yvaUED’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-08-02 20:41:02.142 R[95007:489081] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64