c4ac93ecc6fe5ccc65bebcdfcd5fc7b4 *DESCRIPTION
29f9da093762b852254281ef75f38664 *NAMESPACE
8daff292394936382ba0d12bcec10b39 *R/counts_read_and_filter.R
91bf5e44282c4dd71cb989be98ed2700 *R/data.R
6ba0d30bea7d5c365a168743ad3a5802 *R/de_plots.R
ca9b9564bb4d4acb494cef6ae988f9cf *R/de_util.R
93b1565948db61cd989e136ca28b868f *R/diffExpr.R
cef69a674cb2c22de80f1a51991fb951 *R/diffwrap-package.R
242f340de38a96bd4bb8edab404e5d71 *R/enrichment_util.R
96d8549bebab12b678b3ce78f32ee1f5 *R/ggbiplot.n.R
0cd0c0410823a35c7a7a06a13917a781 *R/heatmap_plots.R
e9c4246d0c4724793cf13e39a4c06fd3 *R/heatmapfunction.R
95361fed1f2935fba4fd64739332e230 *R/logging.R
37bbf45f1bef45f460dd22b6301d1500 *R/modes.R
2c8cb97df9a3004d3e3e6b513be2d7b6 *R/preprocess.R
5e6bac928c6e405df168b47e7ca584b4 *R/qc_plots.R
581b30a647fa757808b1d98acca4f77b *R/qc_util.R
ad5bf48dcdfb92fabfa0a74193b4b47c *R/run_clusterProfiler_GO.R
a3c06609e48baaebfb745571131386fd *R/run_clusterProfiler_KEGG.R
8278b0962b5d2337bfd2529bace03e7e *R/run_gProfileR.R
b8893baab81336e8986582544d2900cb *R/run_topGO.R
ffbdfa645d291527290b80697eac74a9 *R/unexported.R
61167c5cdf64b988fbb0d538d09266f0 *R/utils-columns.R
b56ff2b193ecba52f9ec7f3b10cca008 *R/utils-pipe.R
d14723e7adfb5402f127330a79c0838a *R/venn_functions.R
533839446f70bde34a1050627ce80586 *build/partial.rdb
75420f849b53304b556cd4c5352cd655 *build/vignette.rds
140712ccd4c39261174a6ef3e1f9eb28 *data/diffwrap_counts.rda
d2a9559987fcfa53acf90251c7d342c6 *data/diffwrap_samp_info.rda
d2d003ea734ef1af1d706bd1d23ca975 *inst/doc/diffwrap-vignette.R
f6846bb637696ad49582f6e3ae418ea0 *inst/doc/diffwrap-vignette.html
8ed1a1397a603d23514df17f722a116d *inst/doc/diffwrap-vignette.qmd
4493a1d234852c990ca096c4e9e6e6bc *inst/extdata/example_counts.tsv
956c91161ea71f3c3d073bba9a29b2e7 *inst/extdata/example_samp_info.tsv
52ddd896fc77e681f42027bce67c52d4 *man/correlogram_pheatmap.Rd
c413de2ff695d3e3c7e5b1a30521fa92 *man/diffExpr.Rd
4bd04d5c8f5fe1360b267ea4c5812cc6 *man/diff_expr_3d_scatterplot.Rd
ef2efabf34c5fdb1580fa7439167919c *man/diff_expr_PCA.Rd
1d164802cb6b238c674a1f4013bbd727 *man/diff_expr_PCA_ggbiplot.Rd
94ed3e2384b057f3c56ccf8ae78cf8e9 *man/diff_expr_PCA_ggplot.Rd
9c538d54d1040a295c5cca9c5e3dbcd3 *man/diff_expr_QC_plots.Rd
cce6feda86fb1e9d1ee31ecdddaaa943 *man/diff_expr_biomart.Rd
f47e03dcb9fbbe0b08990f367505b6fb *man/diff_expr_dendro_plot.Rd
610064cb51fcbdc2d5a5443ca227e411 *man/diff_expr_extract_contrasts.Rd
397a9520a49cdd13bebba0e4143ba235 *man/diff_expr_filter_counts.Rd
027e7c09b87915c4ec32ddf846eee9a6 *man/diff_expr_fit.Rd
272b7bb6dfcb5a20a134cff185fe0389 *man/diff_expr_get_samp_info.Rd
9bdd58e9ddf46b1621c8a0582dbdd8c7 *man/diff_expr_ggplot_mds.Rd
54e6337e598b1249629c23f007381fd8 *man/diff_expr_ma_plot.Rd
5874337dfb85c353480be54d8b8a866f *man/diff_expr_make_contrasts.Rd
7fa4d596c397c398ac22884f2bc56227 *man/diff_expr_make_design.Rd
3ade51d49ca0158f90f1121e75045a70 *man/diff_expr_mds_plot.Rd
1f3092dbeffc8127983a506442543c4f *man/diff_expr_pseudo_counts.Rd
82c5b4a4061964dbebff9a4251c19ac8 *man/diff_expr_pval_hist_plot.Rd
cbcb132aa78b1303b695cb7860caa518 *man/diff_expr_read_counts.Rd
2ddb438d1428c401a5e01f63d852b2e9 *man/diff_expr_volcano_plot.Rd
fb6b6c5576e078d7791bc39bb23c6c7e *man/diffr_expr_generate_cleaned_de_table_output.Rd
8ace88a2a1288a6e065e0b56bcc71782 *man/diffr_pheatmap.Rd
e6ec6b9aad59c3414188e24144d05fae *man/diffr_venn.Rd
9c813f47ee9417ecc887bf65dc1054e1 *man/diffwrap-package.Rd
eea0c4a0a0c7b926bae626e60e616fcc *man/diffwrap.Rd
4d83c22bea970f94089cc1b47be4982a *man/diffwrap_counts.Rd
dae9df37608dd7dbc5069e4ddd133a9a *man/diffwrap_samp_info.Rd
185757ec5654d44dbf783a1a65996fb3 *man/dw_dev_off.Rd
a91afcbd4185c40de42e5ac6b8b871ce *man/figures/diffwrap-enrichment.svg
2930d5febe621dab077ca33e4a052d30 *man/figures/diffwrap-pipeline.svg
634b4c734ff809f24278541250d7d3cc *man/figures/diffwrap-pipeline_draft.svg
433e8e69047dff9f5c27ca50a6475fbc *man/fmt_dur.Rd
381905947c0b815561a85b7a9becb07a *man/format_ensembl_ids_annotated_to_term.Rd
3d94eea3ace75bb709ee9119dced35bd *man/get_hm_breaks.Rd
eaf80390ef72e30715ab22e3b7b03645 *man/get_hm_colors.Rd
c0c09cc8971c222efe67e7c5c776bbc7 *man/ggbiplot.n.Rd
f894dea73bcbdca547d05523f776f8f4 *man/make_pheatmap_anno_color.Rd
5f4dcdc4c54f32356511f59030bb70e7 *man/pheatmap_plots.Rd
774d9de8e95aa151215efcd304549d41 *man/pipe.Rd
cf685b998d5a2a4efc7bb0f9f42044e6 *man/plot_enrichment_network.Rd
921d233e7fdae3b539385d7a70c92655 *man/prepare_scale_for_legend.Rd
bf693171c3199420ada488b6489228b7 *man/prepare_volcano_of_given_property.Rd
6c2a5fbb90fe4c5c81ab37fc3464d6d9 *man/quantile_breaks.Rd
56e4982a7b862820368ec6100e7ad2d1 *man/reorderFactors.Rd
6b0b225a65b06134c24e47c5793bd3a7 *man/run.topGO.Rd
6547b344c15921cac407c244a5eeeebf *man/runEnrichmentAnalyses.Rd
c31503d7b6306f80488af92d734b8302 *man/run_clusterProfiler_GO.Rd
feef1254ec449b4578d13ae857245a85 *man/run_clusterProfiler_KEGG.Rd
335b522b90fc01ab2edf42f5b81b747b *man/run_gprofiler.Rd
10ed2e61e0feda2d8f0be7bc7a1b8dda *tests/testthat.R
ee6b41b58695674465f3efecf26b500a *tests/testthat/helper-example-data.R
aa3d0cbe89a236639084cd736b73d5c3 *tests/testthat/test-bugfixes.R
79ead3c65547902cbd195e552bdf7aa5 *tests/testthat/test-diffExpr-e2e.R
951c9c543f377b0bfe6b092bdd528ae3 *tests/testthat/test-enrichment.R
4605ce55af5f7a8ef03869eb2f8129e5 *tests/testthat/test-fit.R
d0317edf5075aaf7dfac1215d2e8ed64 *tests/testthat/test-logging.R
4113b5e2d2c148c7f5e1ceae034dadea *tests/testthat/test-modes.R
714f519729796e810e46c18e8b6de6ca *tests/testthat/test-plots.R
5d42d074d071ba4fc2dc98b08ef2c514 *tests/testthat/test-preprocess.R
356dac38e5e29f4a7183874bad539286 *tests/testthat/test-qc-util.R
bce544f95038e1efb324ea9104535642 *tests/testthat/test-read-and-filter.R
a91afcbd4185c40de42e5ac6b8b871ce *vignettes/diffwrap-enrichment.svg
2930d5febe621dab077ca33e4a052d30 *vignettes/diffwrap-pipeline.svg
8ed1a1397a603d23514df17f722a116d *vignettes/diffwrap-vignette.qmd
