7d6e922543de011a2ab3e41e1ccdd146 *DESCRIPTION
42efbdc718520959082cb64080792bb2 *NAMESPACE
8f6f87e8d1230efef0d0b01dc4ef6c31 *R/mts_Crispr.R
8ee914528dc7c42499bde5f4f8716500 *R/mts_CrisprTS.R
deeb16a797fa84d06f1f4ad14f1ea695 *R/mts_GeneDepCrispr.R
24552785f3b4a9d40647606db0833313 *R/mts_GeneDepID.R
bab7356dbfceac8f7e4fd976ed2c1936 *R/mts_GeneDepMutation.R
607b5327910bfb1e0d7a1c2fdf92af4b *R/mts_Mutation.R
4474efd01612ba2625e21d54ee88eb27 *R/mts_clusterAvg.R
5a8d2c95d82308e17ddafdd33c4ee42c *R/mts_crisprPartition.R
a337dbd1ca0bbee50943a836ac29ac79 *R/mts_formatMatrix.R
c0aea46c935b7769019417415773bbff *R/mts_genepairsChunkGeneration.R
bcba356c9343425ac817a0e6c96ea8ae *R/mts_inducedDependency.R
db2e6d929ba30850e49197a13f3e0843 *R/mts_mixModelCluster.R
f8e152ca056733a16920433d45ffbff0 *R/mts_mixModelCluster_XPR.R
55bf81304007453a16860be61ae071b6 *R/mts_omics.R
6444a5f4518d1e5f55d732bd9fb67222 *R/mts_pairwiseExpressionPlot.R
ec2e20568b50fc41223f96a06fba2027 *R/mts_patternDetection.R
be862cca33e8e0f984c1da5d6e3b1316 *R/mts_plotCRISPRGeneCluster.R
b59d056e4c10f16858e590e6b93329ac *R/mts_plotClusterDistribution.R
f847660caf1d657a7bfb87e7d8628831 *R/mts_plotMutation.R
f0627ab9c433bfa7f090513954a38b57 *R/mts_targetCoverageFromMutations.R
cbdb06afc33247c8b3951f51f3caba1c *R/mts_tests.R
f4237668ae8adc295f0982c9d2c1f13f *R/subFunctions.R
7080893e02c49cd296d4424b9be55069 *build/partial.rdb
35a7e7eb44c9845f2dcd3961c8ed6aa5 *build/vignette.rds
d2e6fa15b5582bd7b0448e974da7151b *data/Formatted_MUTimpactMatrix.rda
18ee4ad01b49dfd3b5327eb4ee218a95 *data/MUT_impactMatrix.rda
2bb88f9f82b59b47c7c389adadb7df6c *data/depMapCRISPRscores_subset.rda
78e07b0d659dd73a42bc1859f7511c0c *data/depMapMUT_small.rda
37f9ab96721516b9b6797c7f9ac2fb64 *data/depMapMUT_subset.rda
14188c66dafa8c811c967d7b6a7a9d7d *data/depMapTissue_subset.rda
895a44d0990be8aa422bb098b97614cd *data/depMapXPR_small.rda
57b6c099db6523298407713262f190c9 *data/depMapXPR_subset.rda
3031e0083c7f03b9d467504e07aa8e98 *data/mRes.rda
407f8b1435a1568f25e96fa7b4a9bed9 *data/mixModelClusters_depMapCRISPR.rda
c50cee45d564221d1e7a3a2ecca60ba8 *data/mixModelClusters_depMapXPR.rda
d02aae5314ec6046aa55383b4c884beb *data/mixModelClusters_vignette.rda
0900119124c9634ef912a758947d2c6b *data/multisepCrisprList.rda
b54e9a2dfa02105a39da167b02324d3a *data/multisepList.rda
4f8fc9a2829d8ffec333f6b62d4accac *inst/doc/MultiSEpVignette.R
52a7a9c5636ae6b5635c5f48482bf7fe *inst/doc/MultiSEpVignette.Rmd
afa752e9ac966da33ec21991e3bfc7a9 *inst/doc/MultiSEpVignette.pdf
35b8d4d261c114a7438952f1f4910e4e *man/Formatted_MUTimpactMatrix.Rd
4484e0b6d682f7496deb591e12f5dfde *man/MUT_impactMatrix.Rd
3113784ff89f59c9dbc0c654162fc629 *man/depMapCRISPRscores_subset.Rd
43f809bf84af2d5b73a8ecc052871a01 *man/depMapMUT_small.Rd
4b54bed0e2de999a33b34d6dfc545a4a *man/depMapMUT_subset.Rd
701266e0ecb4ef7e2ac02ee48cf95b3e *man/depMapTissue_subset.Rd
7d82dcf96fdc8a0501b0fa14549a9343 *man/depMapXPR_small.Rd
f1f0543b5d0adc3363a727eb34e75f37 *man/depMapXPR_subset.Rd
74564c288774749d70579929cd3289fc *man/mRes.Rd
fdc7444cc35128f6bd16184fe3bd7365 *man/mixModelClusters_depMapCRISPR.Rd
90b20353baec557b37aed84b2fb3e52c *man/mixModelClusters_depMapXPR.Rd
daf624b070c3e2290026a61da21450ea *man/mixModelClusters_vignette.Rd
cc9d387f9fe43ff65d5862dac8e5eff6 *man/mts_ClusterAvg.Rd
1ae6738ebe4e47cc6a114f0067aba588 *man/mts_Crispr.Rd
f87c3a396c4543a09fc6eb7f72080f83 *man/mts_CrisprTS.Rd
4f0c68f27244477df4b8521af8c93fd4 *man/mts_GeneDepCrispr.Rd
d6dc4fb0bf570675255ddad45ff07600 *man/mts_GeneDepID.Rd
8f82b7c9f1f1fce991ab4862014365e6 *man/mts_GeneDepMutation.Rd
4399a2697dafe1e47775a7b611f2e3a7 *man/mts_InducedDependency.Rd
6cb583847ac91647f46d70751f9aef69 *man/mts_Mutation.Rd
2a9bbaf30ea08833eeea032660592dec *man/mts_crisprPartition.Rd
697d24d1befd18fc57635024d4b63e55 *man/mts_formatMatrix.Rd
0f0184995994651c5f809a41156c6d34 *man/mts_genepairsChunkGeneration.Rd
3dcaa0e60c61b8cd4916a326510c700d *man/mts_mixModelCluster.Rd
6f8cca1fe3b754ed6a6cc93dd975a1a2 *man/mts_mixModelCluster_XPR.Rd
a06a2bdadba3556e0830dce3daffe448 *man/mts_omics.Rd
315a281d37b801fbf220b562b5f1aee6 *man/mts_pairwiseExpressionPlot.Rd
33c57a0cf97b83279b3353e1d467f33a *man/mts_patternDetection.Rd
f080db4e49fa9824aa71cc86049178a6 *man/mts_plotCRISPRGeneCluster.Rd
6a5c8acf89862862d30fe9e5af22e82a *man/mts_plotClusterDistribution.Rd
028d64f48462f2e1be0f0f338ab033b9 *man/mts_plotMutation.Rd
7a90e2eabe053efd9bc2318692f249df *man/mts_targetCoverageFromMutations.Rd
ba5928596b290c4e32b1c748e7b915c9 *man/mts_tests.Rd
f7104b7feec66146038a023432d2b40e *man/multisepCrisprList.Rd
0fbfbaccc1c603be39756a8b609494c2 *man/multisepList.Rd
de8a1b117d9810463e9f5453a5fb6f7a *tests/testthat.R
d61f25e735adb937a050a0c194b68054 *tests/testthat/helper-mts.R
a05e12bf0e2020553a540348deef7981 *tests/testthat/test-demo.R
2b984bd25aa3cd63e38749cfd32ca113 *tests/testthat/test-mts.R
52a7a9c5636ae6b5635c5f48482bf7fe *vignettes/MultiSEpVignette.Rmd
9e3d649690d3991ece16918b6b554d03 *vignettes/figures/CoMMpassSLnetwork.png
27c430c29e10c2a4a3190f753bf2e345 *vignettes/figures/Figure1.pdf
d4f95ba6e95f427484f2e5a158c4f352 *vignettes/figures/Figure1.tex
042070935bb9c8fff19c91f7f4e5f6a8 *vignettes/figures/MultiSEp_SimpleFlow.png
